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Colony management, supports creation and tracking of research animals: transgenic and congenic lines, knockouts and outbred strains.
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Locus Technology, Inc. provides laboratory and vivarium software for animal research management Using one of three breeding models, set-up mating, introduce parents, check pregnancy and record litters. Adjust litter dates or litter counts if required. Assign sex or other information by individual or spreadsheet. Wean pups and...Software directory of general interest in molecular biology and genetics.
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Untitled Document ...Designed to create a database of mutation loci, to make this information available to as many people as possible.
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MRC HGU MuStaR(TM) Sequence Variant Database Software R cgi scripts is available to handle the new PubMed URL format. Obtain the updates from the Download page. Please Note: MuStaR is now at its end of life and will not be developed further....Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences.
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TagSorter collate, sort, compare and identify SAGE tag sequences Sorter is a database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences. Home Screenshots Download Demo Purchase TagSorter Support Contact Welcome to TagSorter TagSorter is a database application designed...Software that models population genetics with emphasis on genetic drift, selection, and migration.
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PopGen HomePage Gen is a simulation program designed to clarify various population genetic events. It is aimed mainly for teaching purposes. It has been programmed by Jouni Aspi using Microsoft's Visual Basic. The code is based on...Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
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Progeny Genogram, Pedigree Software and Genetic Data Management From simple pedigree drawing to managing large scale genome-wide studies, Progeny delivers the power and flexibility you need to maintain your genetic data. For 10 years and now deployed in over 55 countries, Progeny continues...Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
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Windows computer program by Brian Kinghorn (Dept of Animal Science, University of New England, Australia) aimed to develop into an integrated learning platform for quantitative genetics Integration here means the maintenance of a core database,...Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
http://www.csa.ru/Inst/gorb_dep/inbios/genet/Urchin/u0maps.htm
Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Download WIN and MAC demos and order online.
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Genetics teaching: DNA, PCR, Mendel Meiosis Education programs. We offer interactive computer simulation to teach genetics. Our programs offer learning to students with and without prior genetics knowledge. Genetics teaching: DNA, PCR, Mendel and meiosis. We offer interactive computer simulation to teach genetics....Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes.
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Advanced Genetics Wizard Please bookmark this website It's fun and educational. Why not give it a try? or Start The Genetics Wizard with the link at the top of each page. The Genetics Wizard's answers are statistical probabilities...RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis - from Penn State University.
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Phylogeny Programs (continued) C source code can easily be compiled on Unix or Linux systems. It includes programs to carry out parsimony, distance matrix methods, maximum likelihood, and other methods on a variety of types of data, including...Database application for transgenic mouse colonies. Built-in networking capabilites, for both Mac and PC. Downloadable demo version.
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Big Bench Software No additional server software is required. Now Available: 2-for-1 Licenses and Free Networking! For every license of BBMouse you purchase, we will give you another one free of charge. In addition, we'll give you a...Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
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Biodiversity Database Management Solutions We assist organisations and individuals with an interest in bio-diversity to describe their knowledge and information management needs and provide appropriate solutions to meet those requirements. We over have 40 years combined experience of project...Open-source program to automate or speed up the analysis of DNA fragment length polymorphism samples run on fluorescence based gels . Instructions for use and program download available .
http://www.vgl.ucdavis.edu/STRand
Offers links and other resources for genetic analysis software from The Rockefeller University.
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genetic linkage analysis Publications from the group [may-18-2005] TRAINING COURSES Basic Gene Mapping/Linkage Course (June 20-24, 2005) Basic Gene Mapping Course at Berlin (July 4-8, 2005) Advanced gene mapping course at Munich (November 7-11, 2005) Advanced Gene Mapping/Linkage...A complete suite of population genetic analysis programs for MAC. Includes plug-in modules.
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Untitled Document See the download page for more information. 01 January 2001 GeneticStudio 2.0 is currently being finalized and available for download. New features in GS2.0 include: Redesigned analysis engine. Significant effort has been spent to optimize...Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows and Linux.
http://statgen.ncsu.edu/statgen/soft_powerssr.html
Guide and list of commands used to run this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
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The DARWIN Manual This section is reserved for a short description written by Gonnet and Benner about the early beginnings of Darwin- the motivation, who worked on it etc. The following can be completed at the end. Darwin...Collection of primarily Fortan programs for genetic analysis. Requires registration to download.
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Statistical Genetics Software L is useful for segregation analysis, linkage calculations, genetic counseling, allele frequency estimation, and related kinds of problems. For the latest MENDEL 4 download, please go to the UCLA Human Genetics Software Download Page. FISHER...US National Institutes of Health site with extensive genetic linkage analysis application resources on high performance computer systems. Formerly the Computational Methods and Algorithms Group.
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High Performance Computing and Informatics Office ...Transgenic mouse colony tracking and management software for Mac or Windows. Includes demo software and manuals.
http://www.circusoft.com/gmouse.html
Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
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Pegasys: workflow management for bioinformatics We are pleased to announce the release of version 0.6 of the Pegasys client and server software. The version 0.6 server and client binaries and source code are available for download here. Precompiled client binaries...Application for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
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GENtle It is free software under GPL (source code is here Download Current version 1.7.4 (2005-09-09) Windows GENtleSetup.exe 2.4 MB) Linux GENtle.tar.bz2 2.7 MB requires MySQL client, sqlite2; if you have trouble running it, try some...Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
https://genes.med.virginia.edu/
Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
http://www.emboss.co.nz/products.php?pid=2
Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.
http://www.genesifter.net/
Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
http://www.biostat.jhsph.edu/~kbroman/qtl
Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
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LAMS(TM Laboratory Animal Management System M is a record keeping system originally designed for a breeding colony of transgenic mice, but could also be used for the records of other species. It was written to satisfy the need for a...Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
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linkage software list (page 1) Computer software on the following topics are included here: genetic linkage analysis for human pedigree data, QTL analysis for animal/plant breeding data, genetic marker ordering, genetic association analysis, haplotype construction, pedigree drawing, and population genetics....Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version, documentation and references are available here.
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MapPop distribution page Software for selective mapping and bin mappingThis is the main source of MapPop, software for choosing good samples from mapping populations and for locating new markers on pre-existing maps. If you download MapPop, please inform...Genetic code databases for mammals, humans, mice, dogs, chimpanzees, opossums, vertebrate, and invertebrate animals. Also, has links to related resource sites.
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Genome Sequence and Maps Broad Sequence and genetic variation data from a variety of strategically selected organisms forms the basis for comparative genomics, a discipline that seeks to understand evolutionary relationships as well as underlying mechanisms of physiology and susceptibility...